Overview of the Platform User Interface

Before you begin, set up a DNAnexus Platform account here: https://platform.dnanexus.com/login

Basic Structure

The Platform

There are several ways to interact with the platform. All of these will be covered in future lessons/ courses/ documentation.

We are going to be focused on the user interface (highlighted in green), also known as UI.

Projects

This information can also be found in the Project Section of the Documentation for the Platform

First, what is a project?

• It is a collaborative workspace

• The smallest unit of sharing on the platform

• A place to store objects that are made on the platform

  • Examples of these objects can be files, applets, and workflows

• A place to contain details of running jobs/ analyses and their results

Folder Usage

• The user folder is the storage area for your output files

• You can add more folders into your user folder for organization (maybe one for data, each project, etc. This is however you and your organization/ company wants to do this)

Status of a Data Object

Data can be in one of 3 states

• Open: initial, empty state, awaits upload

• Closing: uploading, not instantaneous

• Closed: Finalization completed, available for next steps

Creating Folders

1. Log into the DNAnexus platform

2. When you login, you will see a list of projects that you are a part of.

3. Navigating to a project

   1. We have prebuilt projects for you

   2. In your project space, select "DNAnexus Academy 101"

      
4. Navigate to the users folder and use Add > New Folder

   

Copying Files

• Copying means from one project to another project

• You cannot copy within the same project because of the file ID.

Resources

Key Concepts

User Interface QuickStart Guide

Full Documentation

To create a support ticket if there are technical issues:

1. Go to the Help header (same section where Projects and Tools are) inside the platform

2. Select "Contact Support"

3. Fill in the Subject and Message to submit a support ticket.